Laboratory reports of respiratory infections made to PHE from PHE and NHS laboratories in England and Wales: weeks 31 to 34, 2016
Updated 6 January 2017
© Crown copyright 2017
This publication is licensed under the terms of the Open Government Licence v3.0 except where otherwise stated. To view this licence, visit nationalarchives.gov.uk/doc/open-government-licence/version/3 or write to the Information Policy Team, The National Archives, Kew, London TW9 4DU, or email: psi@nationalarchives.gov.uk.
Where we have identified any third party copyright information you will need to obtain permission from the copyright holders concerned.
This publication is available at https://www.gov.uk/government/publications/respiratory-infections-laboratory-reports-2016/laboratory-reports-of-respiratory-infections-made-to-phe-from-phe-and-nhs-laboratories-in-england-and-wales-weeks-31-to-34-2016
Data are recorded by week of report, but include only specimens taken in the last eight weeks (ie recent specimens).
1. Table 1. Reports of influenza infection made to PHE Colindale, by week of report
| Week | Week 31 | Week 32 | Week 33 | Week 34 | Total |
|---|---|---|---|---|---|
| Week ending | 7/8/2016 | 14/8/2016 | 21/8/2016 | 28/8/2016 | |
| Influenza A | 17 | 13 | 12 | 16 | 58 |
| Isolation | – | 1 | – | 5 | 6 |
| DIF * | 1 | – | 1 | 1 | 3 |
| PCR | 10 | 9 | 10 | 7 | 36 |
| Other † | 6 | 3 | 1 | 3 | 13 |
| Influenza B | 5 | 1 | 1 | 4 | 11 |
| Isolation | – | – | – | 2 | 2 |
| DIF * | – | – | – | – | – |
| PCR | 2 | 1 | 1 | 1 | 5 |
| Other † | 3 | – | – | 1 | 4 |
* DIF = Direct Immunofluorescence.
† Other = “Antibody detection - single high titre” or “Method not specified”.
2. Table 2. Respiratory viral detections by any method (culture, direct immunofluorescence, PCR, four-fold rise in paired sera, single high serology titre, genomic, electron microscopy, other method, other method unknown), by week of report
| Week | Week 31 | Week 32 | Week 33 | Week 34 | Total |
|---|---|---|---|---|---|
| Week ending | 7/8/2016 | 14/8/2016 | 21/8/2016 | 28/8/2016 | |
| Adenovirus* | 59 | 71 | 68 | 57 | 255 |
| Coronavirus | 1 | 3 | 2 | 4 | 10 |
| Parainfluenza† | 49 | 31 | 41 | 37 | 158 |
| Rhinovirus | 170 | 127 | 98 | 127 | 522 |
| RSV | 39 | 46 | 39 | 41 | 165 |
* Respiratory samples only.
† Includes parainfluenza types 1, 2, 3, 4 and untyped.
3. Table 3. Respiratory viral detections by age group: weeks 31 to 34, 2016
| Age group (years) | <1 year | 1-4 years | 5-14 years | 15-44 years | 45-64 years | ≥65 years | Unknown | Total |
|---|---|---|---|---|---|---|---|---|
| Adenovirus * | 30 | 57 | 30 | 76 | 41 | 16 | 5 | 255 |
| Coronavirus | – | 2 | – | 4 | 2 | 2 | – | 10 |
| Influenza A | 1 | 2 | 1 | 20 | 17 | 14 | 5 | 60 |
| Influenza B | 1 | – | 1 | 8 | 1 | – | 2 | 13 |
| Parainfluenza † | 27 | 25 | 11 | 26 | 41 | 28 | – | 158 |
| Respiratory syncytial virus | 55 | 33 | 14 | 27 | 15 | 19 | 2 | 165 |
| Rhinovirus | 140 | 96 | 42 | 85 | 72 | 78 | 9 | 522 |
* Respiratory samples only.
† Includes parainfluenza types 1, 2, 3, 4 and untyped.
4. Table 4. Laboratory reports of infections associated with atypical pneumonia, by week of report
| Week | Week 31 | Week 32 | Week 33 | Week 34 | Total |
|---|---|---|---|---|---|
| Week ending | 7/8/2016 | 14/8/2016 | 21/8/2016 | 28/8/2016 | |
| Coxiella burnettii | 1 | – | – | – | 1 |
| Respiratory Chlamydia sp.* | 1 | – | – | – | 1 |
| Mycoplasma pneumoniae | 15 | 12 | 11 | 7 | 45 |
| Legionella sp. | 9 | 5 | 10 | 10 | 34 |
* Includes Chlamydia psittaci, Chlamydia pneumoniae, and Chlamydia sp detected from blood, serum, and respiratory specimens.
5. Table 5. Laboratory reports of Legionnaires Disease cases in England and Wales, by week of report
| Week | Week 31 | Week 32 | Week 33 | Week 34 | Total |
|---|---|---|---|---|---|
| Week ending | 7/8/2016 | 14/8/2016 | 21/8/2016 | 28/8/2016 | |
| Nosocomial | – | – | – | – | 0 |
| Community | 4 | 1 | 7 | 3 | 15 |
| Travel abroad | 5 | 3 | 2 | 6 | 16 |
| Travel UK | – | 1 | 1 | 1 | 3 |
| Total | 9 | 5 | 10 | 10 | 34 |
| Male | 9 | 5 | 7 | 5 | 26 |
| Female | – | – | 3 | 5 | 8 |
Thirty-four cases were reported with pneumonia. Twenty-six males aged 38-78 years and eight females aged 50-86 years. Fifteen cases had community-acquired infection. One death was reported in a male aged 78 years.
Nineteen cases were reported with travel association: Austria/Czech Republic/Germany (1) France (1), France/Germany (1), France/Italy (1), France/Italy/Spain/United Kingdom (1), Greece (2), Italy (1), Morocco (1), Spain (4), Turkey (2), United Arab Emirates (1) and United Kingdom (3).
6. Table 6. Laboratory reports of Legionnaires Disease cases in England and Wales, by PHE Centre: weeks 31 to 34, 2016
| Region/Country | Nosocomial | Community | Travel Abroad | Travel UK | Total |
|---|---|---|---|---|---|
| North of England | |||||
| North East | – | – | 2 | – | 2 |
| Cheshire & Merseyside | – | – | – | – | 0 |
| Greater Manchester | – | – | – | – | 0 |
| Cumbria & Lancashire | – | – | 1 | 1 | 2 |
| Yorkshire & the Humber | – | 1 | 2 | – | 3 |
| South of England | |||||
| Devon, Cornwall & Somerset | – | 1 | – | – | 1 |
| Avon, Gloucestershire & Wiltshire | – | – | – | 1 | 1 |
| Wessex | – | – | – | – | 0 |
| Thames Valley | – | 1 | 1 | – | 2 |
| Sussex, Surrey & Kent | – | 1 | 2 | – | 3 |
| Midlands & East of England | |||||
| East Midlands | – | 2 | 1 | – | 3 |
| South Midlands & Hertfordshire | – | 2 | – | – | 2 |
| Anglia & Essex | – | – | 2 | – | 2 |
| West Midlands | – | 3 | 2 | 1 | 6 |
| London Integrated Region | |||||
| London | – | 3 | 1 | – | 4 |
| Public Health Wales | |||||
| Mid & West Wales | – | 1 | – | – | 1 |
| North Wales | – | – | – | – | 0 |
| South East Wales | – | – | – | – | 0 |
| Miscellaneous | |||||
| Other | – | – | 2 | – | 2 |
| Not known | – | – | – | – | 0 |
| Total | 0 | 15 | 16 | 3 | 34 |
This HPR report was published on 2 September 2016.