Guidance

Implementing pathogen genomics: a case study

The work by PHE to establish the central Whole Genome Sequencing (WGS) service and the transformation of a national bacteriology reference laboratory.

Documents

Implementing pathogen genomics: a case study

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Details

This case study outlines the process undertaken by Public Health England (PHE) to establish the central WGS service. It also outlines the transformation of a national bacteriology reference laboratory into a genomics-led service.

This includes:

  • changes in workflows
  • working practices and revisions to analytical procedures as services have migrated to using WGS for pathogen typing
  • surveillance and outbreak investigation
Published 2 August 2018