Development of a data mining tool to find cis-elements concerning in gene expression detectable by microarray analysis.

From:
Department for International Development
Published
1 January 2006
Document Type:
Research Paper
Theme:
Agriculture
Authors:
Kikuchi, S., Doi, K., Hosaka, A., Nagata, T., Satoh, K., Suzuki, K., Iizumi, S., Kimura, S.

Abstract

Accumulated information about over 30,000 full-length cDNA and microarray gene expression data of Oryza sativa enabled us to find motifs commonly existing beside genes simultaneously expressing. Such motifs are expected to play key roles in gene networks, and it also suggests the existence of key trans elements. We are developing a data mining tool to find cis-element candidates from gene lists defined by researchers. Here we report the outline of the tool and the result of preliminary biological test of its usefulness.

Citation

20th IUBMB International Congress of biochemistry and molecular biology and 11th FAOBMB Congress, 18-23 July 2006, Kyoto, Japan. 1 p.

Development of a data mining tool to find cis-elements concerning in gene expression detectable by microarray analysis.

Published 1 January 2006
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